Kirpich A, Shishkin A, Lhewa P, Adeniyi EA, Norris M, Chowell G, Gankin Y, Skums P, Perez Tchernov A. Clustering-Based Multi-Characteristic Comparative Analysis of COVID-19 Epidemiology in Europe. Submitted for the review.
In Progress
Bleichrodt A, Phan A, Luo R, Kirpich A, Chowell G. StatModPredict: An User-Friendly R-Shiny Interface for Fitting and Forecasting with Statistical Models. Submitted for the review.
Holty J-E, Person MK, Binney S, Cook R, Mongkolrattanothai T, Kirpich A, Schrodt CA, Bower WA, Hendricks K. Clinical characteristics and survival of hospitalized anthrax patients with pleural, pericardial, or peritoneal fluid collections. Draft.
Kirpich A, Adeniyi AE, Nemira A, Shishkin A, Bunas AS, Kolomiets ND, Gankin Y, Gasich EL, Glinskaya IN, Skums P. Phylodynamics Analysis of HIV Epidemic History in Belarus in 1987-2022. Draft.
Shishkin A, Kuzmin K, Chowell G, Gankin Y, Perez Tchernov A, Skums P, Kirpich A. Enhancing COVID-19 Incidence and Mortality Predictions Using Google Trends Data Across the 50 U.S. States and D.C. Submitted for the review.
Published
Shishkin A, Bleichrodt A, Luo R, Skums P, Chowell G, Kirpich A. Short-Term Predictions of the Trajectory of Mpox in East Asian Countries, 2022–2023: A Comparative Study of Forecasting Approaches Mathematics 2024 12(23), 3669 DOI: 10.3390/math12233669
Nucci AM, Bashaw H, Kirpich A, Rudolph J. Growth in Pediatric Intestinal Failure after Weaning of Parenteral Nutrition by Primary Diagnosis and Transplant Status and during Teduglutide Therapy. Nutr Clin Pract. 2024 Sep 12; PMID: 39263924 DOI: 10.1002/ncp.11209
Bakhturidze G, Popova L, Kirpich A, Berg CJ, Eriksen MP. Smoke-free legislation impact on the hospitality sector in the Republic of Georgia. Tob Control. 2024 Aug 30. PMID: 39214693 DOI: 10.1136/tc-2023-058513
Bleichrodt A, Luo R, Kirpich A, Chowell G. Evaluating the forecasting performance of ensemble sub-epidemic frameworks and other time series models for the 2022–2023 mpox epidemic. Royal Society Open Science. 2024 Jul 3. PMID: 39076375 PMCID: PMC11285753 DOI: 10.1098/rsos.240248
Norris MH, Zincke D, Daegling DJ, Krigbaum J, McGraw WS, Kirpich A, Hadfield TL, Blackburn JK. Genomic and Phylogenetic Analysis of Bacillus cereus Biovar anthracis Isolated from Archival Bone Samples Reveals Earlier Natural History of the Pathogen. Pathogens. 2023 Aug 20;12(8):1065. PMID: 37624025 PMCID: PMC10457788 DOI: 10.3390/pathogens12081065
Kirpich A, Shishkin A, Lhewa P, Yang C, von Fricken ME, Norris MH, Weppelmann TA. An investigation of the seasonal relationships between meteorological factors, water quality, and sporadic cases of Legionnaires’ disease in Washington, DC. Epidemiology & Infection. 2023 Jan;151:e88. PMID: 37183701 PMCID: PMC10265736 DOI: 0.1017/S0950268823000651
Shishkin A, Lhewa P, Yang C, Gankin Y, Chowell G, Norris M, Skums P, Kirpich A. Excess mortality in Ukraine during the course of COVID-19 pandemic in 2020–2021. Scientific Reports. 2023 Apr 27;13(1):6917. PMID: 37106001 PMCID: PMC10139669 DOI: 10.1038/s41598-023-33113-2
Norris MH, Bluhm AP, Metrailer MC, Jiranantasak T, Kirpich A, Hadfield T, Ponciano JM, Blackburn JK. Beyond the spore, the exosporium sugar anthrose impacts vegetative Bacillus anthracis gene regulation in cis and trans. Scientific Reports. 2023 Mar 28;13(1):5060. PMID: 35361826 PMCID: PMC8970068 DOI: 10.1038/s41598-023-32162-x
Alexandrov V, Kirpich A, Kantidze O, Gankin Y. A multi-reference poly-conformational method for in silico design, optimization, and repositioning of pharmaceutical compounds illustrated for selected SARS-CoV-2 ligands. PeerJ. 2022 Nov 24;10:e14252. PMID: 36447514 PMCID: PMC9701500 DOI: 10.7717/peerj.14252
Alexandrov V, Vilenchik M, Kantidze O, Tsutskiridze N, Kharchilava D, Lhewa P, Shishkin A, Gankin Y, Kirpich A. Novel Efficient Multistage Lead Optimization Pipeline Experimentally Validated for DYRK1B Selective Inhibitors. Journal of Medicinal Chemistry. 2022 Oct 14;65(20):13784-92. PMID: 36239428 PMCID: PMC9619999 DOI: 10.1021/acs.jmedchem.2c00988
Danilov VV, Litmanovich D, Proutski A, Kirpich A, Nefaridze D, Karpovsky A, Gankin Y. Automatic scoring of COVID-19 severity in X-ray imaging based on a novel deep learning workflow. Scientific Reports. 2022 Jul 27;12(1):12791. PMID: 35896761 PMCID: PMC9326426 DOI: 10.1038/s41598-022-15013-z
Kirpich A, Shishkin A, Weppelmann TA, Perez Tchernov A, Skums P, Gankin Y. Excess mortality in Belarus during the COVID-19 pandemic as the case study of a country with limited non-pharmaceutical interventions and limited reporting. Scientific Reports. 2022 Mar 31;12(1):5475. PMID: 35361826 PMCID: PMC8970068 DOI: 10.1038/s41598-022-09345-z
Tariq A, Chakhaia T, Dahal S, Ewing A, Hua X, Ofori SK, Prince O, Salindri AD, Adeniyi AE, Banda JM, Skums P, Luo R, Lara-Díaz LY, Bürger R, Fung IC-H, Shim E, Kirpich A, Srivastava A, Chowell G. An investigation of spatial-temporal patterns and predictions of the coronavirus 2019 pandemic in Colombia, 2020-2021. PLoS Negl Trop Dis. 2022 Mar 4;16(3):e0010228. PMID: 35245285 PMCID: PMC8926206 DOI: 10.1371/journal.pntd.0010228
Danilov VV, Proutski A, Karpovsky A, Kirpich A, Litmanovich D, Nefaridze D, Talalov O, Semyonov S, Koniukhovskii V, Shvartc V, Gankin Y. Indirect supervision applied to COVID-19 and pneumonia classification. Informatics in Medicine Unlocked. 2022 Jan 1;28:100835. PMID: 34977331 PMCID: PMC8712713 DOI: 10.1016/j.imu.2021.100835
Gankin Y, Nemira A, Koniukhovskii V, Chowell G, Weppelmann TA, Skums P, Kirpich A. Investigating the first stage of the COVID-19 pandemic in Ukraine using epidemiological and genomic data. Infection, Genetics and Evolution. 2021 Nov 1;95:105087. PMID: 34592415 PMCID: PMC8474758 DOI: 10.1016/j.meegid.2021.105087