Gorse GJ, Rattigan SM, Kirpich A, Simberkoff MS, Bessesen MT, Gibert C, Nyquist AC, Price CS, Gaydos CA, Radonovich LJ Jr, Perl TM, Rodriguez-Barradas MC, Cummings DA. Influence of Preseason Antibodies Against Influenza Virus on Risk of Influenza Infection Among Healthcare Personnel. The Journal of infectious diseases. 2022 Mar 1;225(5):891-902. PMID: 34534319 DOI: 10.1093/infdis/jiab468
Published
Nemira A, Adeniyi AE, Gasich EL, Bulda KY, Valentovich LN, Krasko AG, Glebova O, Kirpich A, Skums P. SARS-CoV-2 transmission dynamics in Belarus in 2020 revealed by genomic and incidence data analysis. Communications Medicine. 2021 Sep 16;1(1):31. PMID: 35602211 PMCID: PMC9053244 DOI: 10.1038/s43856-021-00031-1
Tariq A, Banda JM, Skums P, Dahal S, Castillo-Garsow C, Espinoza B, Brizuela NG, Saenz RA, Kirpich A, Luo R, Srivastava A, Gutierrez H, Garcia Chan N, Bento AI, Jimenez-Corona ME, Chowell G. Transmission dynamics and forecasts of the COVID-19 pandemic in Mexico, March-December 2020. PloS one. 2021 Jul 21;16(7):e0254826. PMID: 34288969 PMCID: PMC8294497 DOI: 10.1371/journal.pone.0254826
Kirpich A, Koniukhovskii V, Shvartc V, Skums P, Weppelmann TA, Imyanitov E, Semyonov S, Barsukov K, Gankin Y. Development of an interactive, agent-based local stochastic model of COVID-19 transmission and evaluation of mitigation strategies illustrated for the state of Massachusetts, USA. PLoS One. 2021 Feb 17;16(2):e0247182. PMID: 33596247 PMCID: PMC7888623 DOI: 10.1371/journal.pone.0247182
Norris MH, Kirpich A, Bluhm AP, Zincke D, Hadfield T, Ponciano JM, Blackburn JK. Convergent evolution of diverse Bacillus anthracis outbreak strains toward altered surface oligosaccharides that modulate anthrax pathogenesis. PLoS Biology. 2020 Dec 28;18(12):e3001052. PMID: 33370274 PMCID: PMC7793302 DOI: 10.1371/journal.pbio.3001052
Roosa K, Lee Y, Luo R, Kirpich A, Rothenberg R, Hyman JM, Yan P, Chowell G. Short-term forecasts of the COVID-19 epidemic in Guangdong and Zhejiang, China: February 13–23, 2020. Journal of clinical medicine. 2020 Feb 22;9(2):596. PMID: 32098289 PMCID: PMC7073898 DOI: 10.3390/jcm9020596
Roosa K, Lee Y, Luo R, Kirpich A, Rothenberg R, Hyman JM, Yan P, Chowell G. Real-time forecasts of the COVID-19 epidemic in China from February 5th to February 24th, 2020. Infectious Disease Modelling. 2020 Jan 1;5:256-63. PMID: 32110742 PMCID: PMC7033348 DOI: 10.1016/j.idm.2020.02.002
Kirpich A, Ragavan M, Bankson JA, McIntyre LM, Merritt ME. Kinetic analysis of hepatic metabolism using hyperpolarized dihydroxyacetone. Journal of chemical information and modeling. 2019 Jan 2;59(1):605-14. PMID: 30602117 PMCID: PMC6533070 DOI: 10.1021/acs.jcim.8b00745
Kirpich A, Ainsworth EA, Wedow JM, Newman JR, Michailidis G, McIntyre LM. Variable selection in omics data: A practical evaluation of small sample sizes. PloS one. 2018 Jun 21;13(6):e0197910. PMID: 29927942 PMCID: PMC6013185 DOI: 10.1371/journal.pone.0197910
Kirpich A, Ibarra M, Moskalenko O, Fear JM, Gerken J, Mi X, Ashrafi A, Morse AM, McIntyre LM. SECIMTools: a suite of metabolomics data analysis tools. BMC Bioinformatics. 2018 Dec;19(1):1-1. PMID: 29678131 PMCID: PMC5910624 DOI: 10.1186/s12859-018-2134-1
Mir RA, Weppelmann TA, Teng L, Kirpich A, Elzo MA, Driver JD, Jeong KC. Colonization dynamics of cefotaxime resistant bacteria in beef cattle raised without cephalosporin antibiotics. Frontiers in microbiology. 2018 Mar 21;9:500. PMID: 29619015 PMCID: PMC5871660 DOI: 10.3389/fmicb.2018.00500
Patterson RE, Kirpich AS, Koelmel JP, Kalavalapalli S, Morse AM, Cusi K, Sunny NE, McIntyre LM, Garrett TJ, Yost RA. Improved experimental data processing for UHPLC–HRMS/MS lipidomics applied to nonalcoholic fatty liver disease. Metabolomics. 2017 Nov;13:1-1. DOI: 10.1007/s11306-017-1280-1
Ragavan M, Kirpich A, Fu X, Burgess SC, McIntyre LM, Merritt ME. A comprehensive analysis of myocardial substrate preference emphasizes the need for a synchronized fluxomic/metabolomic research design. American Journal of Physiology-Heart and Circulatory Physiology. 2017 Jun 1;312(6):H1215-23. PMID: 28411229 PMCID: PMC5495932 DOI: 10.1152/ajpheart.00016.2017
Kirpich A, Weppelmann TA, Yang Y, Morris Jr JG, Longini Jr IM. Controlling cholera in the Ouest Department of Haiti using oral vaccines. PLOS Neglected Tropical Diseases. 2017 Apr 14;11(4):e0005482. PMID: 28410382 PMCID: PMC5406029 DOI: 10.1371/journal.pntd.0005482
Kirpich A, Leary E. Superfund locations and potential associations with cancer incidence in Florida. Statistics and Public Policy. 2017 Jan 1;4(1):1-9. DOI: 10.1080/2330443X.2016.1267599
Kirpich A, Weppelmann TA, Yang Y, Ali A, Morris Jr JG, Longini IM. Cholera transmission in Ouest Department of Haiti: dynamic modeling and the future of the epidemic. PLoS neglected tropical diseases. 2015 Oct 21;9(10):e0004153. PMID: 26488620 PMCID: PMC4619523 DOI: 10.1371/journal.pntd.0004153
Minarich LA, Kirpich A, Fiske LM, Weinstein DA. Bone mineral density in glycogen storage disease type Ia and Ib. Genetics in medicine. 2012 Aug 1;14(8):737-41. PMID: 22481133 PMCID: PMC3884026 DOI: 10.1038/gim.2012.36